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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 31385.4 Da PI: 6.5034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l++ G +W+++++ g++R++k+c++rw +yl XP_009595050.1 14 KGPWTTEEDKKLINFLLTNGQCCWRSVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.8 | 5.2e-13 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E++l +d++ lG++ W++Ia +++ gRt++++k+ w+++ XP_009595050.1 67 RGVLTEVEEKLVIDLHSCLGNR-WSKIAVRLP-GRTDNEIKNNWNTH 111 6788******************.*********.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.921 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-25 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 20.943 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-10 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-11 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-8 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGRQPCCDKL GVKKGPWTTE EDKKLINFLL TNGQCCWRSV PKLAGLRRCG KSCRLRWTNY 60 LHPDLKRGVL TEVEEKLVID LHSCLGNRWS KIAVRLPGRT DNEIKNNWNT HIKKKLLKMG 120 IDPITHEPLH KETKPSNQST TTGHQQVHVV PESTNVIAQS TNVVAESTNV TKASTSLELE 180 NSSIFSYDLS FSPNENSSCI TDETQLVLDT FTDVAHLIDS PWEFSASATA QKQNFDNENF 240 NWLLDCQDFG IQDFGFDNFN VEKDFILNTI DDIGNKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595050.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q50EX6 | 1e-114 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | F5CSR8 | 1e-112 | F5CSR8_9SOLA; MYB transcription factor ODO1 | ||||
TrEMBL | F5CSR9 | 1e-112 | F5CSR9_9SOLA; MYB transcription factor ODO1 | ||||
STRING | Solyc08g079270.2.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 3e-90 | myb domain protein 85 |